https://ccn-wiki.caset.buffalo.edu/index.php?action=history&feed=atom&title=Viewing_Results_in_Standard_Voxel_Space
Viewing Results in Standard Voxel Space - Revision history
2026-04-17T23:49:04Z
Revision history for this page on the wiki
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https://ccn-wiki.caset.buffalo.edu/index.php?title=Viewing_Results_in_Standard_Voxel_Space&diff=1833&oldid=prev
Chris at 17:17, 31 May 2019
2019-05-31T17:17:33Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 13:17, 31 May 2019</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For example, after running <code>selxavg3-sess -s FS_0183 -analysis FAM.sm4.mni </code>, the '''bold''' directory for this subject will contain a folder for the FAM.sm4.mni analysis. I ran several contrasts, including one for '''task''' and one for '''familiar_vs_unfamiliar'''. The '''task''' contrast can be viewed in tkmedit thus:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For example, after running <code>selxavg3-sess -s FS_0183 -analysis FAM.sm4.mni </code>, the '''bold''' directory for this subject will contain a folder for the FAM.sm4.mni analysis. I ran several contrasts, including one for '''task''' and one for '''familiar_vs_unfamiliar'''. The '''task''' contrast can be viewed in tkmedit thus:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> tkmedit -s FS_0183 -analysis FAM.sm4.mni -c task</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> tkmedit -s FS_0183 -analysis FAM.sm4.mni -c task</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Category: <del style="font-weight: bold; text-decoration: none;">Freesurfer</del>]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Category: <ins style="font-weight: bold; text-decoration: none;">FreeSurfer</ins>]]</div></td></tr>
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Chris
https://ccn-wiki.caset.buffalo.edu/index.php?title=Viewing_Results_in_Standard_Voxel_Space&diff=1832&oldid=prev
Chris at 17:17, 31 May 2019
2019-05-31T17:17:23Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 13:17, 31 May 2019</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3">Line 3:</td>
<td colspan="2" class="diff-lineno">Line 3:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For example, after running <code>selxavg3-sess -s FS_0183 -analysis FAM.sm4.mni </code>, the '''bold''' directory for this subject will contain a folder for the FAM.sm4.mni analysis. I ran several contrasts, including one for '''task''' and one for '''familiar_vs_unfamiliar'''. The '''task''' contrast can be viewed in tkmedit thus:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>For example, after running <code>selxavg3-sess -s FS_0183 -analysis FAM.sm4.mni </code>, the '''bold''' directory for this subject will contain a folder for the FAM.sm4.mni analysis. I ran several contrasts, including one for '''task''' and one for '''familiar_vs_unfamiliar'''. The '''task''' contrast can be viewed in tkmedit thus:</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> tkmedit -s FS_0183 -analysis FAM.sm4.mni -c task</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> tkmedit -s FS_0183 -analysis FAM.sm4.mni -c task</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Category: Freesurfer]]</ins></div></td></tr>
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Chris
https://ccn-wiki.caset.buffalo.edu/index.php?title=Viewing_Results_in_Standard_Voxel_Space&diff=1831&oldid=prev
Chris at 17:16, 31 May 2019
2019-05-31T17:16:41Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 13:16, 31 May 2019</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The results of selxavg3-sess using data preprocessed to match the mni305 template are viewed using tkmedit</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The results of selxavg3-sess using data preprocessed to match the mni305 template are viewed using tkmedit</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> tkmedit -s <sessid> -analysis <analysis name> -c <contrast name></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> tkmedit -s <sessid> -analysis <analysis name> -c <contrast name></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>For example, after running</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>For example, after running <ins style="font-weight: bold; text-decoration: none;"><code></ins>selxavg3-sess -s FS_0183 -analysis FAM.sm4.mni <ins style="font-weight: bold; text-decoration: none;"></code>, the </ins>'''bold''' directory for this subject will contain a folder for the FAM.sm4.mni analysis. I ran several contrasts, including one for '''task''' and one for '''familiar_vs_unfamiliar'''. The '''task''' contrast can be viewed in tkmedit thus:</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"> </del>selxavg3-sess -s FS_0183 -analysis FAM.sm4.mni</div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">The </del>'''bold''' directory for this subject will contain a folder for the FAM.sm4.mni analysis. I ran several contrasts, including one for '''task''' and one for '''familiar_vs_unfamiliar'''. The '''task''' contrast can be viewed in tkmedit thus:</div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> tkmedit -s FS_0183 -analysis FAM.sm4.mni -c task</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> tkmedit -s FS_0183 -analysis FAM.sm4.mni -c task</div></td></tr>
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Chris
https://ccn-wiki.caset.buffalo.edu/index.php?title=Viewing_Results_in_Standard_Voxel_Space&diff=1830&oldid=prev
Chris: Created page with "The results of selxavg3-sess using data preprocessed to match the mni305 template are viewed using tkmedit tkmedit -s <sessid> -analysis <analysis name> -c <contrast name> Fo..."
2019-05-31T17:16:11Z
<p>Created page with "The results of selxavg3-sess using data preprocessed to match the mni305 template are viewed using tkmedit tkmedit -s <sessid> -analysis <analysis name> -c <contrast name> Fo..."</p>
<p><b>New page</b></p><div>The results of selxavg3-sess using data preprocessed to match the mni305 template are viewed using tkmedit<br />
tkmedit -s <sessid> -analysis <analysis name> -c <contrast name><br />
For example, after running<br />
selxavg3-sess -s FS_0183 -analysis FAM.sm4.mni<br />
The '''bold''' directory for this subject will contain a folder for the FAM.sm4.mni analysis. I ran several contrasts, including one for '''task''' and one for '''familiar_vs_unfamiliar'''. The '''task''' contrast can be viewed in tkmedit thus:<br />
tkmedit -s FS_0183 -analysis FAM.sm4.mni -c task</div>
Chris