MRI Setup: Difference between revisions
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(Created page with "== Checklist == Before leaving for the MRI Center, ensure you have the following: *Experimenter Laptop (check that you know its whereabouts prior to the scan date!) *Physical...") |
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*Physical experimental stimuli (if any) | *Physical experimental stimuli (if any) | ||
*Contact information for all participants for that day | *Contact information for all participants for that day | ||
== Upon Arrival == | |||
Empty your pockets of anything metallic | |||
== Experimenter Laptop Setup == | == Experimenter Laptop Setup == | ||
The laptop connects via USB to the Lumina console. The console masquerades as an external USB keypad and sends participant keypresses and scanner trigger events to the laptop. | The laptop connects via USB to the Lumina console. The console masquerades as an external USB keypad and sends participant keypresses and scanner trigger events to the laptop. | ||
=== Connect the Lumina console to the laptop === | |||
#Locate the white USB cable in the back of the Lumina console | #Locate the white USB cable in the back of the Lumina console | ||
#Plug the other end into a USB port in the laptop | #Plug the other end into a USB port in the laptop | ||
=== Check that the keypad is sending signals to the laptop === | |||
'''Before you enter the Magnet area, ensure that you are metal free!''' | |||
#Set the Lumina controller to send the expected signals | |||
#*The '''Controller Mode''' shoudl be set "As Keyboard" | |||
#*Toggle the '''Using''' to ''E-Prime'' | |||
#Find the two 2-button response boxes are in the scanner room | |||
#*They are likely to be found attached to the wheeled display mount stand | |||
#*If they are not attached, ask the technician for help setting them up | |||
#*Examine the button boxes closely. You will see they are labeled '''L''' (blue/yellow) and '''R''' (red/green) | |||
#Log in as the experimenter on the laptop | |||
#Open a terminal window | |||
#Navigate to the directory containing the Keyboard test script | |||
#Launch MATLAB | |||
#Run the keyboard test script | |||
#*The script will give you a number of potential keyboards to test out. Select ''CORRECT KEYBOARD IS TBA'' | |||
#*One of the experimenters should press each of the keypad buttons while the other monitors that the button presses are registering in MATLAB | |||
#*If the Lumina box is configured correctly to send E-Prime signals, the key-presses should be showing up as the numbers 1 to 4 (the scanner trigger will register as a '''^''') | |||
#Troubleshoot if necessary, because running the experiment will absolutely depend on the external USB keyboard being configured | |||
=== Display Setup === | |||
#An HDMI cable (Amazon.com branded) should be poking up through the desk. Connect it to the HDMI port on the laptop (there is only one port that this cable can possibly fit into) | |||
#Participants will typically be looking at stimuli presented on a display positioned at the head of the scanner | |||
#Ensure that the stimuli are projected in the correct orientation | |||
#**Because they are looking through a mirror, the image will have to be flipped horizontally | |||
#**Depending on the mirror attached to the head coil, the image may also need to be flipped vertically | |||
#**The SensaView display control box has a series of 4 toggle buttons that control the display | |||
#**The most likely orientation is marked with a piece of tape on the SensaVue control box. Double-check with the scanner technician to confirm | |||
#***The 16-channel head coil requires the image to be LR flipped; the 32-channel coil requires the image to be LR and TB flipped | |||
=== Audio Setup === | |||
We have not yet run an experiment with auditory stimuli, so this is not yet sorted. However a sketch of the procedure will entail playing a test script that presents some auditory items, and having one of the scan team listen over the MRI headphones while the other runs the script. |
Revision as of 12:13, 23 February 2016
Checklist
Before leaving for the MRI Center, ensure you have the following:
- Experimenter Laptop (check that you know its whereabouts prior to the scan date!)
- Physical experimental stimuli (if any)
- Contact information for all participants for that day
Upon Arrival
Empty your pockets of anything metallic
Experimenter Laptop Setup
The laptop connects via USB to the Lumina console. The console masquerades as an external USB keypad and sends participant keypresses and scanner trigger events to the laptop.
Connect the Lumina console to the laptop
- Locate the white USB cable in the back of the Lumina console
- Plug the other end into a USB port in the laptop
Check that the keypad is sending signals to the laptop
Before you enter the Magnet area, ensure that you are metal free!
- Set the Lumina controller to send the expected signals
- The Controller Mode shoudl be set "As Keyboard"
- Toggle the Using to E-Prime
- Find the two 2-button response boxes are in the scanner room
- They are likely to be found attached to the wheeled display mount stand
- If they are not attached, ask the technician for help setting them up
- Examine the button boxes closely. You will see they are labeled L (blue/yellow) and R (red/green)
- Log in as the experimenter on the laptop
- Open a terminal window
- Navigate to the directory containing the Keyboard test script
- Launch MATLAB
- Run the keyboard test script
- The script will give you a number of potential keyboards to test out. Select CORRECT KEYBOARD IS TBA
- One of the experimenters should press each of the keypad buttons while the other monitors that the button presses are registering in MATLAB
- If the Lumina box is configured correctly to send E-Prime signals, the key-presses should be showing up as the numbers 1 to 4 (the scanner trigger will register as a ^)
- Troubleshoot if necessary, because running the experiment will absolutely depend on the external USB keyboard being configured
Display Setup
- An HDMI cable (Amazon.com branded) should be poking up through the desk. Connect it to the HDMI port on the laptop (there is only one port that this cable can possibly fit into)
- Participants will typically be looking at stimuli presented on a display positioned at the head of the scanner
- Ensure that the stimuli are projected in the correct orientation
- Because they are looking through a mirror, the image will have to be flipped horizontally
- Depending on the mirror attached to the head coil, the image may also need to be flipped vertically
- The SensaView display control box has a series of 4 toggle buttons that control the display
- The most likely orientation is marked with a piece of tape on the SensaVue control box. Double-check with the scanner technician to confirm
- The 16-channel head coil requires the image to be LR flipped; the 32-channel coil requires the image to be LR and TB flipped
Audio Setup
We have not yet run an experiment with auditory stimuli, so this is not yet sorted. However a sketch of the procedure will entail playing a test script that presents some auditory items, and having one of the scan team listen over the MRI headphones while the other runs the script.