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* [[New Research Staff]] | * [[New Research Staff]] | ||
* [[Lab Roles]] | * [[Lab Roles]] | ||
* [[Mess Ups | Times when we messed up]] | |||
* [[Highlight Reel | Times when we rocked it]] | |||
* [[Participant Screening]] | |||
* [[3D Brain Models]] | |||
== Technobabble == | |||
* [[ML Environment | Running a ML Workstation ]] | |||
* [[ubmount | UBFS and ubmount]] | * [[ubmount | UBFS and ubmount]] | ||
* [[SSH | Using SSH]] | * [[SSH | Using SSH]] | ||
* [[Synching Scripts]] | * [[Synching Scripts]] | ||
* [[Connecting to CCR]] | * [[Connecting to CCR]] | ||
* [[Lab Email]] | * [[Lab Email]] | ||
* [[Excel Formulas]] | * [[Excel Formulas]] | ||
* [[Troubleshooting]] | * [[Troubleshooting]] | ||
* [[BASH Tricks]] | * [[BASH Tricks]] | ||
* [[ | * [[FreeSurfer on Windows]] | ||
== Data Analysis == | == Data Analysis == | ||
| Line 39: | Line 43: | ||
* [[Brain Net Viewer]] | * [[Brain Net Viewer]] | ||
* [[Manuscript Formatting]] | * [[Manuscript Formatting]] | ||
== Informational == | == Informational == | ||
Latest revision as of 15:35, 14 November 2022
Welcome to the CCN Lab Wiki.
Terminal Commands & Other Lab Stuff
- New Research Staff
- Lab Roles
- Times when we messed up
- Times when we rocked it
- Participant Screening
- 3D Brain Models
Technobabble
- Running a ML Workstation
- UBFS and ubmount
- Using SSH
- Synching Scripts
- Connecting to CCR
- Lab Email
- Excel Formulas
- Troubleshooting
- BASH Tricks
- FreeSurfer on Windows
Data Analysis
- Data Quality
- Downloading CRTC Data
- Behavioral Analyses
- FreeSurfer Pipeline
- SPM Pipeline
- Time Series Analysis
- Network Analyses
- Self-organized-mapping(SOM)
- Data Simulation
Manuscript Preparation
- Brain Rendering in MRIcron (SPM)
- Producing Tables of Coordinates (SPM)
- Extracting XYZ coordinates of .annot labels
- Color schemes (e.g., color keys for graphs, experiment conditions in fMRI renderings, etc.)
- Above link yoinked from BU's CNR Lab
- Acquisition Parameters at CTRC
- Brain Net Viewer
- Manuscript Formatting
Informational
MediaWiki - Guides for Getting started
Consult the User's Guide for information on using the wiki software.