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== Terminal Commands & Other Lab Stuff == | == Terminal Commands & Other Lab Stuff == | ||
* [ | * [[New Research Staff]] | ||
* [ | * [[Lab Roles]] | ||
* [ | * [[Mess Ups | Times when we messed up]] | ||
* [ | * [[Highlight Reel | Times when we rocked it]] | ||
* [[Participant Screening]] | |||
* [[3D Brain Models]] | |||
== Technobabble == | |||
* [[ML Environment | Running a ML Workstation ]] | |||
* [[ubmount | UBFS and ubmount]] | |||
* [[SSH | Using SSH]] | |||
* [[Synching Scripts]] | |||
* [[Connecting to CCR]] | |||
* [[Lab Email]] | |||
* [[Excel Formulas]] | |||
* [[Troubleshooting]] | |||
* [[BASH Tricks]] | |||
* [[FreeSurfer on Windows]] | |||
== Data Analysis == | == Data Analysis == | ||
* [// | * [https://wiki.cam.ac.uk/bmuwiki/FMRI Data Quality] | ||
* [ | * [[Downloading CRTC Data]] | ||
* [[Behavioral Analyses]] | |||
* [[FreeSurfer | FreeSurfer Pipeline]] | |||
* [[SPM | SPM Pipeline]] | |||
* [[Time Series Analysis]] | |||
* [[Network Analyses]] | |||
*[[Self-organized-mapping(SOM)]] | |||
* [[Data Simulation]] | |||
== Manuscript Preparation == | == Manuscript Preparation == | ||
* [//ccnlab.psy.buffalo.edu/wiki/index.php?title=Rendering_MRIcron Brain Rendering in MRIcron (SPM)] | * [//ccnlab.psy.buffalo.edu/wiki/index.php?title=Rendering_MRIcron Brain Rendering in MRIcron (SPM)] | ||
* [//ccnlab.psy.buffalo.edu/wiki/index.php?title=Producing_Tables_of_Coordinates_(SPM) Producing Tables of Coordinates (SPM)] | * [//ccnlab.psy.buffalo.edu/wiki/index.php?title=Producing_Tables_of_Coordinates_(SPM) Producing Tables of Coordinates (SPM)] | ||
* [[Annotation Coordinates| Extracting XYZ coordinates of .annot labels]] | |||
* [http://colorbrewer2.org/ Color schemes (e.g., color keys for graphs, experiment conditions in fMRI renderings, etc.)] | |||
** Above link yoinked from [http://sites.bu.edu/cnrlab/lab-resources/ BU's CNR Lab] | |||
* [[Acquisition_Parameters | Acquisition Parameters at CTRC]] | |||
* [[Brain Net Viewer]] | |||
* [[Manuscript Formatting]] | |||
== | == Informational == | ||
* [//ccnlab.psy.buffalo.edu/wiki/index.php | * [//ccnlab.psy.buffalo.edu/wiki/index.php/Developmental_Neuroscience Developmental Neuroscience] | ||
* [ | * [[NSF Proposal Submission Walkthrough for n00bs]] | ||
* [[Recipes]] | |||
* [ | |||
== MediaWiki - Guides for Getting started == | == MediaWiki - Guides for Getting started == | ||
Latest revision as of 15:35, 14 November 2022
Welcome to the CCN Lab Wiki.
Terminal Commands & Other Lab Stuff
- New Research Staff
- Lab Roles
- Times when we messed up
- Times when we rocked it
- Participant Screening
- 3D Brain Models
Technobabble
- Running a ML Workstation
- UBFS and ubmount
- Using SSH
- Synching Scripts
- Connecting to CCR
- Lab Email
- Excel Formulas
- Troubleshooting
- BASH Tricks
- FreeSurfer on Windows
Data Analysis
- Data Quality
- Downloading CRTC Data
- Behavioral Analyses
- FreeSurfer Pipeline
- SPM Pipeline
- Time Series Analysis
- Network Analyses
- Self-organized-mapping(SOM)
- Data Simulation
Manuscript Preparation
- Brain Rendering in MRIcron (SPM)
- Producing Tables of Coordinates (SPM)
- Extracting XYZ coordinates of .annot labels
- Color schemes (e.g., color keys for graphs, experiment conditions in fMRI renderings, etc.)
- Above link yoinked from BU's CNR Lab
- Acquisition Parameters at CTRC
- Brain Net Viewer
- Manuscript Formatting
Informational
MediaWiki - Guides for Getting started
Consult the User's Guide for information on using the wiki software.