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* [[Annotation Coordinates| Extracting XYZ coordinates of .annot labels]] | * [[Annotation Coordinates| Extracting XYZ coordinates of .annot labels]] | ||
* [http://colorbrewer2.org/ Color schemes (e.g., color keys for graphs, experiment conditions in fMRI renderings, etc.)] | * [http://colorbrewer2.org/ Color schemes (e.g., color keys for graphs, experiment conditions in fMRI renderings, etc.)] | ||
** Above link yoinked from [http://sites.bu.edu/cnrlab/lab-resources/ BU's CNR Lab] | ** Above link yoinked from [http://sites.bu.edu/cnrlab/lab-resources/ BU's CNR Lab] | ||
* [[Acquisition_Parameters | Acquisition Parameters at CTRC]] | |||
== Experiment A to Z (not necessarily in alphabetical order) == | == Experiment A to Z (not necessarily in alphabetical order) == | ||
Revision as of 14:43, 16 May 2018
Welcome to the CCN Lab Wiki.
Terminal Commands & Other Lab Stuff
- New Research Staff
- UBFS and ubmount
- Using SSH
- Synching Scripts
- Connecting to CCR
- Times when we messed up
- Times when we rocked it
- Lab Email
- Excel Formulas
- Troubleshooting
- BASH Tricks
- Participant Screening
Data Analysis
- Downloading CRTC Data
- Behavioral Analyses
- FreeSurfer Pipeline
- SPM Pipeline
- Time Series Analysis
- Network Analyses
- Self-organized-mapping(SOM)
Manuscript Preparation
- Brain Rendering in MRIcron (SPM)
- Producing Tables of Coordinates (SPM)
- Extracting XYZ coordinates of .annot labels
- Color schemes (e.g., color keys for graphs, experiment conditions in fMRI renderings, etc.)
- Above link yoinked from BU's CNR Lab
- Acquisition Parameters at CTRC
Experiment A to Z (not necessarily in alphabetical order)
- MATLAB Functions
- Participant Triage
- Pre-fMRI Scanning Protocol
- Participant Instructions
- MRI Prep (Prior to scan date)
- MRI Setup
- MIKENET Neural Network C Library Setup
- TensorFlow OpenSource Python Setup
- IDs for Reading Experiment BOLD
- Center for Computational Research (CCR)
Informational
MediaWiki - Guides for Getting started
Consult the User's Guide for information on using the wiki software.