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* [[Acquisition_Parameters | Acquisition Parameters at CTRC]] | * [[Acquisition_Parameters | Acquisition Parameters at CTRC]] | ||
* [[Brain Net Viewer]] | * [[Brain Net Viewer]] | ||
* [[Manuscript Formatting]] | |||
== Experiment A to Z (not necessarily in alphabetical order) == | == Experiment A to Z (not necessarily in alphabetical order) == | ||
Revision as of 21:19, 8 November 2018
Welcome to the CCN Lab Wiki.
Terminal Commands & Other Lab Stuff
- New Research Staff
- UBFS and ubmount
- Using SSH
- Synching Scripts
- Connecting to CCR
- Times when we messed up
- Times when we rocked it
- Lab Email
- Excel Formulas
- Troubleshooting
- BASH Tricks
- Participant Screening
Data Analysis
- Data Quality
- Downloading CRTC Data
- Behavioral Analyses
- FreeSurfer Pipeline
- SPM Pipeline
- Time Series Analysis
- Network Analyses
- Self-organized-mapping(SOM)
Manuscript Preparation
- Brain Rendering in MRIcron (SPM)
- Producing Tables of Coordinates (SPM)
- Extracting XYZ coordinates of .annot labels
- Color schemes (e.g., color keys for graphs, experiment conditions in fMRI renderings, etc.)
- Above link yoinked from BU's CNR Lab
- Acquisition Parameters at CTRC
- Brain Net Viewer
- Manuscript Formatting
Experiment A to Z (not necessarily in alphabetical order)
- MATLAB Functions
- Participant Triage
- Pre-fMRI Scanning Protocol
- Participant Instructions
- MRI Prep (Prior to scan date)
- MRI Setup
- MIKENET Neural Network C Library Setup
- TensorFlow OpenSource Python Setup
- IDs for Reading Experiment BOLD
- Center for Computational Research (CCR)
Informational
MediaWiki - Guides for Getting started
Consult the User's Guide for information on using the wiki software.