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* [[New Research Staff]] | * [[New Research Staff]] | ||
* [[Lab Roles]] | * [[Lab Roles]] | ||
* [[Mess Ups | Times when we messed up]] | |||
* [[Highlight Reel | Times when we rocked it]] | |||
* [[Participant Screening]] | |||
* [[3D Brain Models]] | |||
== Technobabble == | |||
* [[ML Environment | Setting up a ML Workstation ]] | |||
* [[ubmount | UBFS and ubmount]] | * [[ubmount | UBFS and ubmount]] | ||
* [[SSH | Using SSH]] | * [[SSH | Using SSH]] | ||
* [[Synching Scripts]] | * [[Synching Scripts]] | ||
* [[Connecting to CCR]] | * [[Connecting to CCR]] | ||
* [[Lab Email]] | * [[Lab Email]] | ||
* [[Excel Formulas]] | * [[Excel Formulas]] | ||
* [[Troubleshooting]] | * [[Troubleshooting]] | ||
* [[BASH Tricks]] | * [[BASH Tricks]] | ||
* [[FreeSurfer on Windows]] | * [[FreeSurfer on Windows]] | ||
Revision as of 18:39, 6 July 2022
Welcome to the CCN Lab Wiki.
Terminal Commands & Other Lab Stuff
- New Research Staff
- Lab Roles
- Times when we messed up
- Times when we rocked it
- Participant Screening
- 3D Brain Models
Technobabble
- Setting up a ML Workstation
- UBFS and ubmount
- Using SSH
- Synching Scripts
- Connecting to CCR
- Lab Email
- Excel Formulas
- Troubleshooting
- BASH Tricks
- FreeSurfer on Windows
Data Analysis
- Data Quality
- Downloading CRTC Data
- Behavioral Analyses
- FreeSurfer Pipeline
- SPM Pipeline
- Time Series Analysis
- Network Analyses
- Self-organized-mapping(SOM)
- Data Simulation
Manuscript Preparation
- Brain Rendering in MRIcron (SPM)
- Producing Tables of Coordinates (SPM)
- Extracting XYZ coordinates of .annot labels
- Color schemes (e.g., color keys for graphs, experiment conditions in fMRI renderings, etc.)
- Above link yoinked from BU's CNR Lab
- Acquisition Parameters at CTRC
- Brain Net Viewer
- Manuscript Formatting
Experiment A to Z (not necessarily in alphabetical order)
- Project-Specific Documentation
- MATLAB Functions
- Participant Triage
- Pre-fMRI Scanning Protocol
- Participant Instructions
- MRI Prep (Prior to scan date)
- MRI Setup
- MIKENET Neural Network C Library Setup
- TensorFlow OpenSource Python Setup
- IDs for Reading Experiment BOLD
- Center for Computational Research (CCR)
- Neural Networks in Python
- Horikawa dataset
aws s3 sync --no-sign-request s3://openneuro.org/ds001246 ds001246-download/
- MTA dataset
- Wall of Ideas
Informational
MediaWiki - Guides for Getting started
Consult the User's Guide for information on using the wiki software.